ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 25.00 0.05 0.12 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 40.00 6.77 0.20 100.0 FTX-219 lncRNA transverse colon (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 224.00 37.90 1.09 91.43 FTX-219 lncRNA transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 212.00 0.68 1.04 28.42 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 528.00 1.70 2.58 81.11 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 10015.00 32.30 48.91 82.06 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 534.00 1.72 2.61 71.58 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 4781.00 15.42 23.35 72.46 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 909.00 2.93 4.44 100.0 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 1336.00 4.31 6.52 100.0 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 219.00 0.71 1.07 100.0 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 349.00 0.81 1.70 79.68 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 7292.00 16.91 35.61 91.89 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 13.00 0.03 0.06 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1308.00 3.03 6.39 52.78 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 21.00 0.05 0.10 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 13.00 0.03 0.06 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 242.00 0.56 1.18 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 168.00 0.39 0.82 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 41.00 0.10 0.20 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 6478.00 15.02 31.64 40.14 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 61.00 0.14 0.30 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 21314.00 49.43 104.09 83.98 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 1408.00 1.56 6.88 100.0 MIRLET7A1HG-203 lncRNA transverse colon (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 271.00 87.14 1.32 100.0 MEG8-225 lncRNA transverse colon (Tissue)