ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 32048.00 93.88 156.51 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 195.00 0.57 0.95 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 16.00 0.05 0.08 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 915.00 2.68 4.47 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 446.00 1.31 2.18 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 16.00 0.84 0.08 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 894.00 46.68 4.37 91.88 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 21.00 1.10 0.10 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 54.00 2.82 0.26 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 98.00 5.12 0.48 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 116.00 6.06 0.57 88.55 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 3065.00 6.41 14.97 66.5 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 216.00 0.45 1.05 100.0 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 2564.00 5.36 12.52 42.34 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 108.00 0.23 0.53 100.0 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 234.00 0.02 1.14 33.72 LINC01962-202 lncRNA transverse colon (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 1142601.00 97.65 5579.88 100.0 LINC01962-202 lncRNA transverse colon (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 587.00 0.05 2.87 100.0 LINC01962-202 lncRNA transverse colon (Tissue)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 646.00 39.10 3.15 91.5 SNHG14-241 lncRNA transverse colon (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 3959.00 95.63 19.33 100.0 MEG8-228 lncRNA transverse colon (Tissue)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 62.00 23.94 0.30 100.0 SNHG14-254 lncRNA transverse colon (Tissue)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 20.00 2.87 0.10 100.0 SNHG14-261 lncRNA transverse colon (Tissue)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 379.00 54.45 1.85 88.55 SNHG14-261 lncRNA transverse colon (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 2785.00 17.11 13.60 100.0 LIMD1-AS1-204 lncRNA transverse colon (Tissue)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 145.00 0.89 0.71 100.0 LIMD1-AS1-204 lncRNA transverse colon (Tissue)