ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 4014.00 0.20 3.31 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 329190.27 16.29 271.50 20.35 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 412.00 0.02 0.34 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 534.00 0.03 0.44 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 1607058.52 79.54 1325.44 83.18 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 5476.00 0.27 4.52 63.2 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 79.00 0.00 0.07 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 6689.00 0.33 5.52 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 2544.00 0.13 2.10 100.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 15.00 0.00 0.01 60.0 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 35461.00 1.76 29.25 94.6 SNHG5-273 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 17567.00 17.17 14.49 74.0 SNHG14-323 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 3.00 0.07 0.00 25.0 MEG8-251 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 1327.00 30.02 1.09 72.08 MEG8-251 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 9.00 0.20 0.01 75.0 MEG8-251 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 392.00 8.87 0.32 36.77 MEG8-251 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 141631.00 31.93 116.81 40.46 SNHG14-336 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 1.00 0.00 0.00 100.0 SNHG14-336 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 285460.00 64.36 235.44 89.16 SNHG14-336 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 284406.00 94.18 234.57 99.01 SNHG14-341 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 838.00 33.40 0.69 100.0 NCL-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1.00 0.09 0.00 100.0 NCL-216 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 1697.00 51.88 1.40 100.0 FMN2-209 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 8.00 0.04 0.01 100.0 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 158.00 0.73 0.13 45.8 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)