ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 65.00 0.00 0.05 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1468.00 0.02 1.21 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 21121.00 0.22 17.42 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 743.00 0.01 0.61 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 45.00 0.00 0.04 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 138729.00 1.45 114.42 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 2542.00 0.03 2.10 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 607.00 0.01 0.50 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 1022960.00 10.68 843.70 98.31 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 283.00 0.00 0.23 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 370160.00 3.87 305.29 88.53 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 516.00 0.01 0.43 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 312.00 0.00 0.26 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 41.00 0.00 0.03 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 266500.00 2.78 219.80 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1956.00 0.02 1.61 78.15 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 387.44 0.00 0.32 37.43 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 74.00 0.00 0.06 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1819.00 0.02 1.50 58.06 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 387.00 0.00 0.32 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 1741.00 0.02 1.44 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 6162.00 0.06 5.08 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 457764.00 33.59 377.55 100.0 SNHG14-315 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 471284.00 34.58 388.70 97.32 SNHG14-315 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 377257.00 27.68 311.15 95.07 SNHG14-315 lncRNA neural progenitor cell (In vitro differentiated cells)