ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 63.00 0.29 0.05 100.0 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 56.00 0.26 0.05 100.0 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 14519.00 66.71 11.97 100.0 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 187.00 0.86 0.15 54.2 LINC02739-203 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 10.00 43.48 0.01 100.0 MIR124-1HG-216 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 67.00 11.07 0.06 100.0 SNHG10-212 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 192035.51 84.03 158.38 85.58 SNHG19-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 32721.33 14.32 26.99 27.18 SNHG19-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 9.32 0.00 0.01 51.8 SNHG19-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 10.09 0.00 0.01 72.05 SNHG19-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 3889.00 73.98 3.21 100.0 MIR222HG-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 790.00 15.03 0.65 94.72 MIR222HG-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 94.00 1.79 0.08 100.0 MIR222HG-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_485_+ 458–485 9438.00 22.96 7.78 100.0 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 233.00 0.57 0.19 38.26 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 2612.07 6.36 2.15 80.89 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_333_+ 313–333 376.00 0.91 0.31 73.29 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 595.12 1.45 0.49 31.93 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 7020.00 17.08 5.79 100.0 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 2919.00 7.10 2.41 87.84 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 6885.00 16.75 5.68 85.75 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_490_+ 458–490 153.00 0.37 0.13 100.0 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 3780.00 9.20 3.12 60.77 MIR302CHG-205 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 52.00 12.35 0.04 100.0 RPSA-216 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1.00 14.29 0.00 100.0 MIR99AHG-370 lncRNA neural progenitor cell (In vitro differentiated cells)