ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 9964.00 14.44 8.22 100.0 ENST00000655317 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 291.00 2.61 0.24 46.56 LINC01962-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 1900.00 17.05 1.57 100.0 LINC01962-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 650.00 5.83 0.54 100.0 LINC01962-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 36276.00 23.31 29.92 99.08 SNHG14-241 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 1304.00 87.75 1.08 100.0 MEG8-228 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 8642.00 25.55 7.13 100.0 SNHG14-254 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 18712.00 11.88 15.43 100.0 SNHG14-261 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 115551.00 73.37 95.30 95.29 SNHG14-261 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 5312.00 49.32 4.38 100.0 LIMD1-AS1-204 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 1327.00 12.32 1.09 90.21 LIMD1-AS1-204 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 47.00 74.60 0.04 94.0 MIR99AHG-262 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 4.00 6.35 0.00 100.0 MIR99AHG-262 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 35778.00 75.71 29.51 100.0 SNHG14-270 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 733.00 0.16 0.60 100.0 SNHG14-275 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661688.1 ENST00000661688.1_965_986_+ 965–986 2.00 1.49 0.00 100.0 MIR9-2HG-225 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 20.00 14.93 0.02 100.0 MIR9-2HG-225 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 4.00 3.05 0.00 100.0 MEG8-233 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 7.00 5.34 0.01 100.0 MEG8-233 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 7358.00 1.73 6.07 100.0 SNHG14-278 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 390891.00 91.80 322.39 97.22 SNHG14-278 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 60.00 4.65 0.05 100.0 MEG8-234 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 744.00 57.63 0.61 100.0 MEG8-234 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 5126.00 89.10 4.23 100.0 SNHG17-252 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 10666.00 12.64 8.80 50.03 SNHG14-288 lncRNA neural progenitor cell (In vitro differentiated cells)