ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 1217.00 0.12 1.00 80.65 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 6762.95 0.67 5.58 72.56 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 3910.00 0.39 3.22 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 561.00 0.06 0.46 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 64.00 0.01 0.05 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 1554.00 0.15 1.28 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 10511.68 1.04 8.67 53.25 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 7193.05 0.71 5.93 49.03 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 294.00 0.03 0.24 100.0 U2.6-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 24.00 33.80 0.02 100.0 ENST00000619323 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 357.00 32.37 0.29 100.0 SCARNA4-202 scaRNA neural progenitor cell (In vitro differentiated cells)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 693.00 15.09 0.57 100.0 ENST00000625572 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 5297.00 86.71 4.37 100.0 ENST00000628177 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 82462.00 97.14 68.01 100.0 ENST00000630615 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 165.00 29.57 0.14 100.0 DMRT2-209 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 195.00 34.95 0.16 100.0 DMRT2-209 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 191.00 7.56 0.16 100.0 SNORD98-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 1366.00 54.03 1.13 100.0 SNORD98-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 181362.84 57.37 149.58 60.16 MIR106AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 530.55 0.17 0.44 70.93 MIR106AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 892.00 0.28 0.74 100.0 MIR106AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 218.96 0.07 0.18 29.27 MIR106AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 11.00 7.69 0.01 100.0 MEG8-222 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 62.00 43.36 0.05 100.0 MEG8-222 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 50496.00 6.94 41.65 96.82 SNHG14-224 lncRNA neural progenitor cell (In vitro differentiated cells)