ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 125.00 61.88 0.10 100.0 SNHG21-206 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 4849.00 90.98 4.00 100.0 SNORD11B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 10969.00 83.23 9.05 100.0 SNORD91B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 6.00 33.33 0.00 100.0 MIR219A2HG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 22691.00 83.84 18.71 92.09 SNORD91A-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 3789.00 44.95 3.13 95.75 MIR486-1-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 36323.00 17.00 29.96 29.12 NOP56-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 3787.00 1.77 3.12 100.0 NOP56-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 620.00 0.29 0.51 100.0 NOP56-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 60568.00 28.34 49.95 99.23 NOP56-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 280.00 5.18 0.23 77.56 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 163.35 3.02 0.13 50.57 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 17.00 0.31 0.01 100.0 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1948.00 36.07 1.61 100.0 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 12.00 0.22 0.01 100.0 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 146.00 2.70 0.12 34.27 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 148.59 2.75 0.12 46.0 RNA5-8SN2-201 rRNA neural progenitor cell (In vitro differentiated cells)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 132.00 94.96 0.11 100.0 MIR7974-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 1.00 33.33 0.00 100.0 MIR376A1-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 2136.00 0.21 1.76 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 3108.44 0.31 2.56 33.35 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 899704.00 89.06 742.04 99.77 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 32.00 0.00 0.03 100.0 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 20886.00 2.07 17.23 77.92 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 1073.00 0.11 0.88 35.8 U2.3-201 snRNA neural progenitor cell (In vitro differentiated cells)