ENCFF192PKY

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR961FIG
Description: Part of ENCODE experiment ENCSR961FIG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 1380.00 65.50 8.32 100.0 GNL3-211 retained intron upper lobe of left lung (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 233.00 18.27 1.41 100.0 RPL5-205 retained intron upper lobe of left lung (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 59.00 0.37 0.36 100.0 ZBED9-AS1-201 lncRNA upper lobe of left lung (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 648.00 82.44 3.91 100.0 RPS3A-206 retained intron upper lobe of left lung (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 10924.00 97.46 65.87 100.0 COX7C-203 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2163.00 3.16 13.04 100.0 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 7647.21 11.16 46.11 24.68 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 34430.29 50.25 207.62 85.51 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 18543.00 27.06 111.82 99.69 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 340.00 5.84 2.05 92.9 RACK1-230 retained intron upper lobe of left lung (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 33.00 0.57 0.20 27.73 RACK1-230 retained intron upper lobe of left lung (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 39.00 0.88 0.24 100.0 RNA5SP486-201 rRNA pseudogene upper lobe of left lung (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 5619.00 90.75 33.88 100.0 SCARNA5-201 scaRNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 232.00 0.09 1.40 100.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 791.00 0.30 4.77 100.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 158444.00 59.25 955.44 92.87 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 48982.00 18.32 295.37 99.46 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 536.00 0.20 3.23 100.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 1089.00 0.41 6.57 66.89 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 11400.00 4.26 68.74 90.02 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 17856.00 6.68 107.67 59.47 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 1011.00 0.38 6.10 100.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 79.00 0.03 0.48 100.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 110.00 0.04 0.66 40.74 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 13805.00 82.14 83.25 90.21 MIR3142HG-201 lncRNA upper lobe of left lung (Tissue)