ENCFF192PKY

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR961FIG
Description: Part of ENCODE experiment ENCSR961FIG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 2939.00 4.50 17.72 100.0 MIR151A-201 miRNA upper lobe of left lung (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 56304.00 86.23 339.52 91.6 MIR151A-201 miRNA upper lobe of left lung (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 3003.00 99.01 18.11 100.0 DENND3-221 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 700.00 2.37 4.22 54.39 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 4917.00 16.65 29.65 60.35 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 587.00 1.99 3.54 45.61 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 75.00 0.25 0.45 100.0 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 648.00 2.19 3.91 100.0 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 431.00 1.46 2.60 100.0 WDR74-204 protein coding upper lobe of left lung (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 77.00 14.34 0.46 100.0 SCARNA9-201 lncRNA upper lobe of left lung (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 30924.00 96.01 186.48 100.0 TAF1D-215 retained intron upper lobe of left lung (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 244962.00 75.28 1477.16 77.1 ENST00000548801 lncRNA upper lobe of left lung (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 1057.00 21.17 6.37 100.0 ENST00000554988 lncRNA upper lobe of left lung (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 511.00 10.23 3.08 100.0 ENST00000554988 lncRNA upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 167.00 1.63 1.01 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 177.00 1.73 1.07 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 9119.00 88.89 54.99 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 2610.00 91.68 15.74 100.0 TEKT4P2-201 transcribed unprocessed pseudogene upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 655.00 4.43 3.95 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 387.00 2.62 2.33 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 5.00 0.03 0.03 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 759.00 5.14 4.58 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 10028.00 67.87 60.47 92.19 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 16.00 0.00 0.10 100.0 ENST00000563103 lncRNA upper lobe of left lung (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 5983.00 54.54 36.08 100.0 RPL4-207 retained intron upper lobe of left lung (Tissue)