ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 349.00 2.36 1.67 100.0 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 4648.00 31.49 22.28 66.7 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 179.00 1.21 0.86 100.0 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 1032.00 0.17 4.95 74.08 LINC01962-202 lncRNA transverse colon (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 609331.00 98.69 2921.31 100.0 LINC01962-202 lncRNA transverse colon (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 768.00 0.12 3.68 100.0 LINC01962-202 lncRNA transverse colon (Tissue)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 4093.00 62.36 19.62 94.9 SNHG14-241 lncRNA transverse colon (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 8921.00 96.56 42.77 100.0 MEG8-228 lncRNA transverse colon (Tissue)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 333.00 29.50 1.60 100.0 SNHG14-254 lncRNA transverse colon (Tissue)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 161.00 4.74 0.77 100.0 SNHG14-261 lncRNA transverse colon (Tissue)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 2008.00 59.13 9.63 86.33 SNHG14-261 lncRNA transverse colon (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 1047.00 9.54 5.02 100.0 LIMD1-AS1-204 lncRNA transverse colon (Tissue)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 459.00 4.18 2.20 100.0 LIMD1-AS1-204 lncRNA transverse colon (Tissue)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 1482.00 13.51 7.11 91.14 LIMD1-AS1-204 lncRNA transverse colon (Tissue)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 1613.00 72.14 7.73 87.43 MIR99AHG-262 lncRNA transverse colon (Tissue)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 208.00 9.30 1.00 100.0 MIR99AHG-262 lncRNA transverse colon (Tissue)
ENST00000660376.1 ENST00000660376.1_1_78_+ 1–78 4.00 4.12 0.02 100.0 SNHG14-266 lncRNA transverse colon (Tissue)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 119.00 72.12 0.57 100.0 SNHG14-270 lncRNA transverse colon (Tissue)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 86.00 1.39 0.41 100.0 SNHG14-275 lncRNA transverse colon (Tissue)
ENST00000661688.1 ENST00000661688.1_965_986_+ 965–986 3.00 4.11 0.01 100.0 MIR9-2HG-225 lncRNA transverse colon (Tissue)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 36.00 49.32 0.17 90.0 MIR9-2HG-225 lncRNA transverse colon (Tissue)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 309.00 36.06 1.48 100.0 MEG8-233 lncRNA transverse colon (Tissue)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 227.00 26.49 1.09 100.0 MEG8-233 lncRNA transverse colon (Tissue)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 295.00 28.53 1.41 100.0 SNHG14-278 lncRNA transverse colon (Tissue)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 21.00 2.03 0.10 100.0 SNHG14-278 lncRNA transverse colon (Tissue)