ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1826.00 3.57 8.75 56.59 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 41.00 0.08 0.20 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 85.00 0.17 0.41 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 432.00 0.84 2.07 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 106.00 0.21 0.51 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 150.00 0.29 0.72 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 6661.00 13.01 31.93 40.64 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 253.00 0.49 1.21 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 22179.00 43.32 106.33 86.34 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 2423.00 1.67 11.62 100.0 MIRLET7A1HG-203 lncRNA transverse colon (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 2195.00 93.84 10.52 100.0 MEG8-225 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 240536.00 92.90 1153.20 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 215.00 0.08 1.03 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 1478.00 0.57 7.09 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 24.00 0.01 0.12 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 4320.00 1.67 20.71 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 9173.00 3.54 43.98 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1.00 0.00 0.00 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 114.00 1.09 0.55 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 5840.00 55.76 28.00 92.98 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 11.00 0.11 0.05 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 185.00 1.77 0.89 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 907.00 8.66 4.35 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 658.00 6.28 3.15 85.01 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 907.00 6.14 4.35 28.62 ENST00000655317 lncRNA transverse colon (Tissue)