ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 617.00 42.91 2.96 100.0 MEG8-234 lncRNA transverse colon (Tissue)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 320.00 22.25 1.53 100.0 MEG8-234 lncRNA transverse colon (Tissue)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 4574.00 91.43 21.93 100.0 SNHG17-252 lncRNA transverse colon (Tissue)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 786.00 13.61 3.77 57.75 SNHG14-288 lncRNA transverse colon (Tissue)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 4546.00 78.69 21.79 95.81 SNHG14-288 lncRNA transverse colon (Tissue)
ENST00000665397.1 ENST00000665397.1_2_81_+ 2–81 11.00 7.69 0.05 100.0 SNHG14-295 lncRNA transverse colon (Tissue)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 342.00 66.15 1.64 100.0 MEG8-240 lncRNA transverse colon (Tissue)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 17.00 7.00 0.08 100.0 SNHG14-306 lncRNA transverse colon (Tissue)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 141.00 58.02 0.68 97.24 SNHG14-306 lncRNA transverse colon (Tissue)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 3.00 1.23 0.01 100.0 SNHG14-306 lncRNA transverse colon (Tissue)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 66.00 4.25 0.32 100.0 ENST00000666735 lncRNA transverse colon (Tissue)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 23.00 1.48 0.11 100.0 ENST00000666735 lncRNA transverse colon (Tissue)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 642.00 78.10 3.08 100.0 MEG8-242 lncRNA transverse colon (Tissue)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 332.56 26.63 1.59 43.99 SNHG14-312 lncRNA transverse colon (Tissue)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 433.89 34.74 2.08 57.39 SNHG14-312 lncRNA transverse colon (Tissue)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 4.00 0.32 0.02 100.0 SNHG14-312 lncRNA transverse colon (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 89.00 0.09 0.43 100.0 MEG8-244 lncRNA transverse colon (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 345.00 0.35 1.65 100.0 MEG8-244 lncRNA transverse colon (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 97034.00 98.53 465.21 99.61 MEG8-244 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 766.00 0.10 3.67 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 2.00 0.00 0.01 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 3165.00 0.39 15.17 98.2 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 1999.16 0.25 9.58 57.41 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 800.00 0.10 3.84 87.53 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 167085.00 20.82 801.05 99.44 SNHG1-248 lncRNA transverse colon (Tissue)