ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 11.00 36.67 0.47 100.0 ATP5MK-205 protein coding GM23248 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 5.00 16.67 0.21 100.0 ATP5MK-205 protein coding GM23248 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 17.00 37.78 0.73 100.0 LINC01556-201 lncRNA GM23248 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 45.00 68.18 1.93 100.0 ATAD3A-202 protein coding GM23248 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 13.00 48.15 0.56 68.42 TMC5-202 protein coding GM23248 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 19.00 82.61 0.81 100.0 ZMYM2-203 protein coding GM23248 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 8.00 6.45 0.34 100.0 RNVU1-7-201 snRNA GM23248 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 86.00 40.76 3.68 100.0 SNORD24-201 snoRNA GM23248 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 14.00 93.33 0.60 100.0 Y_RNA.389-201 misc RNA GM23248 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 9483.00 87.98 406.00 99.07 SNORD101-201 snoRNA GM23248 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 30.00 0.28 1.28 100.0 SNORD101-201 snoRNA GM23248 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 49.00 0.45 2.10 100.0 SNORD101-201 snoRNA GM23248 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 602.00 5.59 25.77 88.14 SNORD101-201 snoRNA GM23248 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 12760.00 96.51 546.30 100.0 SNORD37-201 snoRNA GM23248 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 12409.00 91.69 531.27 98.46 SNORD59A-201 snoRNA GM23248 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 1.00 33.33 0.04 100.0 SNORD14D-201 snoRNA GM23248 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 3.00 33.33 0.13 100.0 Y_RNA.555-201 misc RNA GM23248 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 311.00 92.01 13.31 93.67 MIR25-201 miRNA GM23248 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 414.00 90.59 17.72 98.57 MIR99B-201 miRNA GM23248 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 71.00 17.88 3.04 55.91 MIR23B-201 miRNA GM23248 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 306.00 77.08 13.10 93.87 MIR23B-201 miRNA GM23248 (Cell line)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 504.00 6.34 21.58 100.0 MIR199B-201 miRNA GM23248 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 6698.00 84.32 286.76 92.11 MIR199B-201 miRNA GM23248 (Cell line)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 23.00 85.19 0.98 100.0 MIR30B-201 miRNA GM23248 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 48.00 90.57 2.06 100.0 MIR181D-201 miRNA GM23248 (Cell line)