ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 14.00 0.05 0.60 100.0 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 3.00 0.01 0.13 100.0 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 331.00 1.09 14.17 100.0 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 977.89 3.23 41.87 67.81 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 362.52 1.20 15.52 29.94 U2.3-201 snRNA GM23248 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 99.00 0.33 4.24 100.0 U2.6-201 snRNA GM23248 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 33.00 1.01 1.41 71.74 ENST00000619323 lncRNA GM23248 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 3159.00 97.02 135.25 99.25 ENST00000619323 lncRNA GM23248 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 18.00 21.69 0.77 100.0 SCARNA4-202 scaRNA GM23248 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 20.00 62.50 0.86 100.0 ENST00000625572 miRNA GM23248 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 110.00 64.33 4.71 100.0 ENST00000628177 snoRNA GM23248 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 3425.00 95.30 146.64 100.0 ENST00000630615 snoRNA GM23248 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 43.00 28.86 1.84 100.0 DMRT2-209 protein coding GM23248 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 32.00 21.48 1.37 100.0 DMRT2-209 protein coding GM23248 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 35.00 7.34 1.50 100.0 SNORD98-201 snoRNA GM23248 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 342.00 71.70 14.64 100.0 SNORD98-201 snoRNA GM23248 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 636.83 43.80 27.26 45.36 MIR106AHG-201 lncRNA GM23248 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 1.00 0.07 0.04 100.0 MIR106AHG-201 lncRNA GM23248 (Cell line)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 57.00 14.47 2.44 100.0 MEG8-222 lncRNA GM23248 (Cell line)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 137.00 34.77 5.87 100.0 MEG8-222 lncRNA GM23248 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 4.00 2.00 0.17 100.0 SNHG14-224 lncRNA GM23248 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 5.00 2.50 0.21 100.0 SNHG14-224 lncRNA GM23248 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 68.00 34.00 2.91 85.0 SNHG14-224 lncRNA GM23248 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 24.00 12.00 1.03 34.78 SNHG14-224 lncRNA GM23248 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 446.59 75.95 19.12 90.22 5S_rRNA.20-201 rRNA pseudogene GM23248 (Cell line)