ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 7.00 31.82 0.30 100.0 SNORD11B-201 snoRNA GM23248 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 21.00 26.58 0.90 100.0 SNORD91B-201 snoRNA GM23248 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 63.00 19.27 2.70 58.88 SNORD91A-201 snoRNA GM23248 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 25.00 40.98 1.07 89.29 MIR486-1-201 miRNA GM23248 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 655.00 16.77 28.04 72.94 NOP56-219 retained intron GM23248 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 27.00 0.69 1.16 100.0 NOP56-219 retained intron GM23248 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 72.00 1.84 3.08 100.0 NOP56-219 retained intron GM23248 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 2192.00 56.13 93.85 82.25 NOP56-219 retained intron GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 74.00 3.95 3.17 64.35 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 8.21 0.44 0.35 58.63 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 18.00 0.96 0.77 100.0 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 760.00 40.60 32.54 100.0 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 40.00 2.14 1.71 100.0 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 54.00 2.88 2.31 42.19 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 6.01 0.32 0.26 42.95 RNA5-8SN2-201 rRNA GM23248 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 3.00 100.00 0.13 100.0 MIR7974-201 miRNA GM23248 (Cell line)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 2.00 28.57 0.09 100.0 MIR376A1-201 miRNA GM23248 (Cell line)
ENST00000616574.2 ENST00000616574.2_7_27_+ 7–27 1.00 14.29 0.04 100.0 MIR376A1-201 miRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 148.00 0.49 6.34 100.0 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 2.18 0.01 0.09 27.22 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 8241.00 27.20 352.83 98.72 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 2868.00 9.47 122.79 66.54 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 7054.00 23.28 302.01 69.5 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 2022.00 6.67 86.57 78.62 U2.3-201 snRNA GM23248 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 6.41 0.02 0.27 80.1 U2.3-201 snRNA GM23248 (Cell line)