ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 201.00 75.85 8.61 100.0 SNORD92-201 snoRNA GM23248 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 240.00 46.51 10.28 100.0 NSRP1-214 protein coding GM23248 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 231.00 44.77 9.89 92.03 NSRP1-214 protein coding GM23248 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 423.00 30.34 18.11 85.63 MIR23AHG-201 lncRNA GM23248 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 641.00 45.98 27.44 93.3 MIR23AHG-201 lncRNA GM23248 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 31.00 2.22 1.33 79.49 MIR23AHG-201 lncRNA GM23248 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 16.00 1.15 0.69 72.73 MIR23AHG-201 lncRNA GM23248 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 157.00 78.50 6.72 100.0 ODAD3-204 nonsense mediated decay GM23248 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1544.00 6.09 66.10 100.0 VMP1-217 retained intron GM23248 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 238.00 0.94 10.19 100.0 VMP1-217 retained intron GM23248 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 18329.00 72.24 784.73 80.5 VMP1-217 retained intron GM23248 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 31.00 0.35 1.33 100.0 C19orf48P-203 retained intron GM23248 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 8037.56 91.75 344.12 94.75 C19orf48P-203 retained intron GM23248 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 117.62 1.34 5.04 1.39 C19orf48P-203 retained intron GM23248 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 7.00 0.08 0.30 100.0 C19orf48P-203 retained intron GM23248 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 2.00 25.00 0.09 100.0 RPS11-206 retained intron GM23248 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 4.00 50.00 0.17 100.0 RPS11-206 retained intron GM23248 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1532.00 76.22 65.59 78.64 CARMN-209 lncRNA GM23248 (Cell line)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 540.00 57.39 23.12 100.0 SNORD114-21-201 snoRNA GM23248 (Cell line)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 197.00 20.94 8.43 100.0 SNORD114-21-201 snoRNA GM23248 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 146.00 97.99 6.25 100.0 MIR98-201 miRNA GM23248 (Cell line)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 2726.00 89.52 116.71 100.0 SNORD113-5-201 snoRNA GM23248 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 15.00 100.00 0.64 100.0 MIR15A-201 miRNA GM23248 (Cell line)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 20.00 83.33 0.86 100.0 MIR376C-201 miRNA GM23248 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 38.00 58.46 1.63 100.0 SNHG21-206 retained intron GM23248 (Cell line)