ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 23523.00 99.57 1007.10 99.73 MIR22HG-212 lncRNA GM23248 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 14.00 0.59 0.60 26.92 SNORD53B-201 snoRNA GM23248 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 2031.00 85.37 86.95 88.5 SNORD53B-201 snoRNA GM23248 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 38.00 1.60 1.63 73.08 SNORD53B-201 snoRNA GM23248 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 38.00 77.55 1.63 100.0 ENST00000578036 lncRNA GM23248 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 200.00 86.58 8.56 100.0 RPL23A-207 protein coding GM23248 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 39.00 90.70 1.67 100.0 MIR744-201 miRNA GM23248 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 1.00 100.00 0.04 100.0 MIR378C-201 miRNA GM23248 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 32.42 0.11 1.39 63.58 RPL23A-208 retained intron GM23248 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 16.48 0.06 0.71 48.48 RPL23A-208 retained intron GM23248 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 22346.00 74.86 956.71 90.31 RPL23A-208 retained intron GM23248 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 6978.00 23.38 298.75 92.71 RPL23A-208 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 1785.00 8.02 76.42 55.85 RPL17-211 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 2309.00 10.37 98.86 38.25 RPL17-211 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 70.00 0.31 3.00 100.0 RPL17-211 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 11444.00 51.41 489.96 93.35 RPL17-211 retained intron GM23248 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 6023.00 27.06 257.87 92.75 RPL17-211 retained intron GM23248 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 173.00 2.13 7.41 100.0 RPL17-214 retained intron GM23248 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 4340.95 53.46 185.85 58.63 RPL17-214 retained intron GM23248 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 3629.59 44.70 155.40 47.74 RPL17-214 retained intron GM23248 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 12.00 0.01 0.51 100.0 SNORD43-201 snoRNA GM23248 (Cell line)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 180059.00 99.33 7708.95 99.94 SNORD43-201 snoRNA GM23248 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 31.00 0.02 1.33 100.0 SNORD43-201 snoRNA GM23248 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 13.00 86.67 0.56 100.0 MIR151B-201 miRNA GM23248 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 12.00 2.67 0.51 100.0 SNORD3A-201 snoRNA GM23248 (Cell line)