ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 13.00 1.15 0.56 100.0 SNHG14-220 retained intron GM23248 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 789.00 70.01 33.78 100.0 SNHG14-220 retained intron GM23248 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 265.00 23.51 11.35 100.0 SNHG14-220 retained intron GM23248 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 9.00 0.80 0.39 100.0 SNHG14-220 retained intron GM23248 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 353.00 98.33 15.11 100.0 TEKT4P2-201 transcribed unprocessed pseudogene GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 3090.00 88.77 132.29 98.28 RPL4-202 retained intron GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 34.00 0.98 1.46 100.0 RPL4-202 retained intron GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 2.00 0.06 0.09 100.0 RPL4-202 retained intron GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 1.00 0.03 0.04 100.0 RPL4-202 retained intron GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 98.00 2.82 4.20 100.0 RPL4-202 retained intron GM23248 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 15.00 0.78 0.64 100.0 ENST00000563103 lncRNA GM23248 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 3160.00 86.50 135.29 100.0 RPL4-207 retained intron GM23248 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 30.00 0.82 1.28 100.0 RPL4-207 retained intron GM23248 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 2835.00 60.27 121.38 93.94 ENST00000565336 lncRNA GM23248 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 1338.00 28.44 57.28 89.68 ENST00000565336 lncRNA GM23248 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 105.00 5.79 4.50 100.0 RBMX-210 retained intron GM23248 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 38.00 2.09 1.63 100.0 RBMX-210 retained intron GM23248 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 1464.00 80.71 62.68 92.95 RBMX-210 retained intron GM23248 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 3.00 1.08 0.13 100.0 RPL4-214 retained intron GM23248 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 131.00 47.12 5.61 100.0 RPL4-214 retained intron GM23248 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 155.00 5.11 6.64 100.0 POLG-DT-202 lncRNA GM23248 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 1131.68 37.28 48.45 74.06 POLG-DT-202 lncRNA GM23248 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 694.22 22.87 29.72 42.3 POLG-DT-202 lncRNA GM23248 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 73.00 25.09 3.13 100.0 ENST00000570843 lncRNA GM23248 (Cell line)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 22.00 57.89 0.94 100.0 MIR497HG-207 lncRNA GM23248 (Cell line)