ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 1671.00 56.26 11.64 100.0 RPL5-205 retained intron Karpas-422 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 363.00 12.22 2.53 100.0 RPL5-205 retained intron Karpas-422 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 325.00 9.44 2.26 100.0 ZBED9-AS1-201 lncRNA Karpas-422 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 6965.00 74.44 48.54 100.0 RPS3A-206 retained intron Karpas-422 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 35786.00 97.02 249.39 100.0 COX7C-203 protein coding Karpas-422 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 51327.77 44.82 357.69 46.97 RACK1-229 protein coding Karpas-422 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 534.00 0.47 3.72 64.18 RACK1-229 protein coding Karpas-422 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 17.00 0.01 0.12 100.0 RACK1-229 protein coding Karpas-422 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 58164.03 50.79 405.33 55.59 RACK1-229 protein coding Karpas-422 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 100964.00 18.46 703.60 60.96 RACK1-230 retained intron Karpas-422 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 430496.00 78.69 3000.04 86.56 RACK1-230 retained intron Karpas-422 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 11.00 1.04 0.08 100.0 RNA5SP486-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1065.00 79.36 7.42 100.0 SCARNA5-201 scaRNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 32279.00 12.67 224.95 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 651.00 0.26 4.54 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 3864.00 1.52 26.93 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 79638.00 31.25 554.98 97.36 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 7761.00 3.05 54.08 67.26 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 23.00 0.01 0.16 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 10000.00 3.92 69.69 82.38 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 11820.00 4.64 82.37 67.93 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 5027.00 1.97 35.03 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 5725.00 2.25 39.90 72.59 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 1249.00 0.49 8.70 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 1364.00 0.54 9.51 26.41 RNY4-201 misc RNA Karpas-422 (Cell line)