ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 35.00 76.09 0.24 87.5 MIR3142HG-201 lncRNA Karpas-422 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 397.00 54.83 2.77 100.0 SNHG6-204 retained intron Karpas-422 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 21992.00 50.46 153.26 88.41 MIR151A-201 miRNA Karpas-422 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 17759.00 40.75 123.76 100.0 MIR151A-201 miRNA Karpas-422 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 1203.00 93.40 8.38 100.0 DENND3-221 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 28.00 0.00 0.20 33.73 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 4632.00 0.78 32.28 79.88 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 9.00 0.00 0.06 100.0 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 55.00 0.01 0.38 66.27 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 1140.00 0.19 7.94 100.0 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 158.00 0.03 1.10 100.0 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 40.00 0.01 0.28 100.0 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 840.00 0.14 5.85 96.22 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 438.00 19.53 3.05 100.0 HSPA8-211 retained intron Karpas-422 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1582.00 10.94 11.02 100.0 SCARNA9-201 lncRNA Karpas-422 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 108.00 0.03 0.75 100.0 TAF1D-215 retained intron Karpas-422 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 319281.00 94.07 2225.01 100.0 TAF1D-215 retained intron Karpas-422 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 102.00 1.60 0.71 100.0 HSPA8-215 retained intron Karpas-422 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 3178.00 49.88 22.15 100.0 HSPA8-215 retained intron Karpas-422 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 34.00 0.53 0.24 100.0 HSPA8-215 retained intron Karpas-422 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1077.00 20.06 7.51 100.0 RPS2-215 retained intron Karpas-422 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 2619.00 92.48 18.25 93.04 ENST00000548801 lncRNA Karpas-422 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1419.00 9.43 9.89 100.0 ENST00000554988 lncRNA Karpas-422 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 5956.00 39.56 41.51 100.0 ENST00000554988 lncRNA Karpas-422 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 70.00 0.46 0.49 100.0 ENST00000554988 lncRNA Karpas-422 (Cell line)