ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 157.00 0.46 1.09 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 1890.00 67.94 13.17 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 87.00 1.19 0.61 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 254.00 1.47 1.77 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 4437.00 25.64 30.92 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 2548.00 14.73 17.76 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 7.00 21.21 0.05 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA Karpas-422 (Cell line)