ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 7.00 0.00 0.05 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 66.00 0.04 0.46 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 174.00 0.11 1.21 23.14 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 137090.00 85.12 955.35 99.3 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 9573.00 5.94 66.71 92.44 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 196.00 0.12 1.37 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1065.00 0.66 7.42 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 19961.00 60.61 139.10 69.56 RPL7A-207 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 301.00 0.91 2.10 100.0 RPL7A-207 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 146.00 0.44 1.02 100.0 RPL7A-207 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 122.00 0.55 0.85 100.0 RN7SL2-201 misc RNA Karpas-422 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 832.00 3.73 5.80 8.77 RN7SL2-201 misc RNA Karpas-422 (Cell line)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 4.00 22.22 0.03 100.0 RGS11-208 retained intron Karpas-422 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 3720.00 71.72 25.92 97.82 NOP56-217 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 330.00 6.36 2.30 99.7 NOP56-217 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 7903.00 4.65 55.07 100.0 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 95.00 0.06 0.66 61.29 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3.00 0.00 0.02 100.0 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 60.00 0.04 0.42 38.71 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 5211.00 3.06 36.31 100.0 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 137825.00 81.03 960.47 98.69 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 473.00 0.28 3.30 65.6 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 228.00 0.13 1.59 100.0 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1266.00 6.73 8.82 100.0 GNL3-211 retained intron Karpas-422 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 14873.00 79.09 103.65 100.0 GNL3-211 retained intron Karpas-422 (Cell line)