ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 137292.00 17.17 283.56 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 887.00 0.11 1.83 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 377.00 0.05 0.78 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1141.00 0.14 2.36 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 3112.00 0.39 6.43 71.94 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 27297.00 3.41 56.38 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 2479.00 0.31 5.12 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 697.00 0.09 1.44 99.86 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 63455.00 7.94 131.06 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 1723.00 0.22 3.56 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 20138.00 2.52 41.59 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 9486.00 1.19 19.59 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 77.00 0.01 0.16 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 613.00 8.04 1.27 100.0 FTX-219 lncRNA GM12878 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 4409.00 57.86 9.11 85.79 FTX-219 lncRNA GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 3198.00 1.19 6.61 59.11 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 36678.00 13.68 75.75 87.2 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 32260.00 12.03 66.63 71.67 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 2212.00 0.82 4.57 40.89 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 27648.00 10.31 57.10 82.63 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 106903.00 39.86 220.80 100.0 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 4316.00 1.61 8.91 100.0 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 13656.00 5.09 28.20 100.0 CTC1-214 protein coding GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 1090.00 0.87 2.25 79.16 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 18821.00 15.04 38.87 96.58 ENST00000651540 lncRNA GM12878 (Cell line)