ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 210.00 0.17 0.43 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 4415.00 3.53 9.12 60.89 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 401.00 0.32 0.83 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 453.00 0.36 0.94 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 17772.00 14.20 36.71 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 684.00 0.55 1.41 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 344.00 0.27 0.71 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 42979.00 34.33 88.77 88.2 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 679.00 0.54 1.40 100.0 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 10506.00 8.39 21.70 51.72 ENST00000651540 lncRNA GM12878 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 12213.00 3.85 25.22 100.0 MIRLET7A1HG-203 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 1259725.00 87.54 2601.82 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 139.00 0.01 0.29 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 334.00 0.02 0.69 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 615.00 0.04 1.27 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 132380.00 9.20 273.42 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 16460.00 1.14 34.00 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 4.00 0.00 0.01 100.0 SNHG29-232 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 4.00 0.18 0.01 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 449.00 19.77 0.93 95.33 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 82.00 3.61 0.17 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 8.00 0.35 0.02 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 117.00 5.15 0.24 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 31.00 1.37 0.06 100.0 SNHG14-234 lncRNA GM12878 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 77538.00 64.15 160.15 79.12 ENST00000655317 lncRNA GM12878 (Cell line)