ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 631.33 0.05 1.30 58.78 MIR106AHG-201 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 505.00 20.83 1.04 99.02 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 128.00 5.28 0.26 96.97 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 4.00 0.17 0.01 100.0 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 77.00 3.18 0.16 96.25 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 18.00 0.74 0.04 100.0 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 10.00 0.41 0.02 19.61 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 201.00 8.29 0.42 55.52 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 624.00 25.74 1.29 81.78 SNHG14-224 lncRNA GM12878 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 38760.88 52.11 80.06 82.17 5S_rRNA.20-201 rRNA pseudogene GM12878 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 2750.00 9.33 5.68 100.0 HSPA9-211 retained intron GM12878 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 14510.00 49.21 29.97 96.75 HSPA9-211 retained intron GM12878 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 64.00 84.21 0.13 100.0 DNM3OS-205 lncRNA GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 108.00 0.01 0.22 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 19881.00 2.49 41.06 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 62.00 0.01 0.13 33.7 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 55866.00 6.99 115.38 99.61 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 22759.00 2.85 47.01 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 325.00 0.04 0.67 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 501.00 0.06 1.03 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 170005.00 21.26 351.13 99.39 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 4316.00 0.54 8.91 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 81784.00 10.23 168.92 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 103669.00 12.96 214.12 100.0 GAS5-230 retained intron GM12878 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1813.00 0.23 3.74 100.0 GAS5-230 retained intron GM12878 (Cell line)