ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 841.00 12.66 1.74 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 9359.00 10.48 19.33 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 30919.00 35.62 63.86 93.24 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 258.00 0.68 0.53 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 2010.00 5.29 4.15 52.58 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 6.00 0.11 0.01 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 553.00 5.95 1.14 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 26.00 0.11 0.05 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 11029.00 46.09 22.78 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 131.00 34.47 0.27 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 119937.00 42.53 247.72 96.89 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 3303.00 1.17 6.82 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 290.00 0.41 0.60 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 10226.00 34.47 21.12 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 11102.00 7.43 22.93 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 487.00 3.85 1.01 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 1712.00 13.53 3.54 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 2860.00 22.60 5.91 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA GM12878 (Cell line)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 282.00 6.56 0.58 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA GM12878 (Cell line)