ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 67698.00 8.78 171.81 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 54382.00 7.05 138.02 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1582.00 0.21 4.01 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 147204.00 19.09 373.59 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 783.00 0.10 1.99 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 407.00 0.05 1.03 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 823.00 0.11 2.09 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 4388.00 0.57 11.14 68.58 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 36352.00 4.71 92.26 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1608.00 0.21 4.08 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 884.00 0.11 2.24 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 43300.00 5.62 109.89 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 998.00 0.13 2.53 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 20330.00 2.64 51.60 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 17053.00 2.21 43.28 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 1.00 0.00 0.00 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 2101.00 0.27 5.33 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 499.00 6.41 1.27 100.0 FTX-219 lncRNA K562 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 3216.00 41.30 8.16 74.76 FTX-219 lncRNA K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 1687.00 0.93 4.28 43.89 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 9928.00 5.48 25.20 48.88 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 33230.00 18.35 84.33 64.26 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 2157.00 1.19 5.47 56.11 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 36046.00 19.91 91.48 82.44 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 33894.00 18.72 86.02 100.0 CTC1-214 protein coding K562 (Cell line)