ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 3967.00 2.19 10.07 100.0 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 18702.00 10.33 47.46 100.0 CTC1-214 protein coding K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 236.00 0.54 0.60 82.23 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 13978.00 32.10 35.47 99.25 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 549.00 1.26 1.39 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 327.00 0.75 0.83 49.03 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 1349.00 3.10 3.42 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 537.00 1.23 1.36 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 1256.00 2.88 3.19 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 729.00 1.67 1.85 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 1557.00 3.58 3.95 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 2694.00 6.19 6.84 83.28 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 1158.00 2.66 2.94 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 1399.00 3.21 3.55 73.13 ENST00000651540 lncRNA K562 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 33.00 0.22 0.08 100.0 MIRLET7A1HG-203 lncRNA K562 (Cell line)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 44.00 61.11 0.11 100.0 MEG8-225 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 788386.00 96.67 2000.84 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 44.00 0.01 0.11 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 463.00 0.06 1.18 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 553.00 0.07 1.40 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 6430.00 0.79 16.32 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 3958.00 0.49 10.04 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 2.00 1.27 0.01 100.0 SNHG14-234 lncRNA K562 (Cell line)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 1.00 0.63 0.00 100.0 SNHG14-234 lncRNA K562 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1.00 0.63 0.00 100.0 SNHG14-234 lncRNA K562 (Cell line)