ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 674.00 4.57 1.71 100.0 DMRT2-209 protein coding K562 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 1097.00 27.35 2.78 100.0 SNORD98-201 snoRNA K562 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 1558.00 38.84 3.95 100.0 SNORD98-201 snoRNA K562 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 1100430.23 52.35 2792.77 58.39 MIR106AHG-201 lncRNA K562 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 0.87 0.00 0.00 21.64 MIR106AHG-201 lncRNA K562 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 46.00 0.00 0.12 100.0 MIR106AHG-201 lncRNA K562 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 2.56 0.00 0.01 63.9 MIR106AHG-201 lncRNA K562 (Cell line)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 4.00 7.27 0.01 100.0 MEG8-222 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 8.00 3.10 0.02 100.0 SNHG14-224 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 5.00 1.94 0.01 100.0 SNHG14-224 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 2.00 0.78 0.01 50.0 SNHG14-224 lncRNA K562 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 3.00 1.16 0.01 60.0 SNHG14-224 lncRNA K562 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 20123.08 26.44 51.07 71.61 5S_rRNA.20-201 rRNA pseudogene K562 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 2866.00 8.56 7.27 100.0 HSPA9-211 retained intron K562 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 16838.00 50.31 42.73 97.44 HSPA9-211 retained intron K562 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 512.00 93.43 1.30 100.0 DNM3OS-205 lncRNA K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 41.00 0.01 0.10 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 19832.00 2.57 50.33 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 117.00 0.02 0.30 32.05 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 56522.00 7.33 143.45 99.64 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 30257.00 3.92 76.79 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 238.00 0.03 0.60 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 447.00 0.06 1.13 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 170029.00 22.05 431.52 98.49 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 3833.00 0.50 9.73 100.0 GAS5-230 retained intron K562 (Cell line)