ENCFF001REQ

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 4506.00 3.68 11.44 54.82 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 3060.00 2.82 7.77 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 7761.00 1.85 19.70 87.76 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 720.00 14.21 1.83 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 4646.00 4.98 11.79 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 65906.00 50.22 167.26 95.71 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 234.00 0.49 0.59 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 4902.00 10.18 12.44 60.39 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 58.00 0.86 0.15 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 375.00 3.73 0.95 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 60.00 0.23 0.15 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 17416.00 52.90 44.20 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 366.00 19.27 0.93 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 174883.00 43.85 443.83 96.59 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 6165.00 1.55 15.65 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 360.00 0.33 0.91 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 12644.00 43.34 32.09 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 7570.00 3.23 19.21 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 252.00 0.93 0.64 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 2242.00 8.24 5.69 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 15736.00 57.86 39.94 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA K562 (Cell line)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 104.00 2.42 0.26 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA K562 (Cell line)