ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 901.00 0.12 1.67 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 3369.00 0.46 6.26 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 7575.00 1.04 14.08 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 24300.00 3.32 45.17 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 7.00 5.38 0.01 100.0 SNHG14-234 lncRNA K562 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 4.00 3.08 0.01 100.0 SNHG14-234 lncRNA K562 (Cell line)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 4.00 3.08 0.01 100.0 SNHG14-234 lncRNA K562 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 63071.00 70.73 117.25 93.96 ENST00000655317 lncRNA K562 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 4914.00 5.51 9.13 100.0 ENST00000655317 lncRNA K562 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 5155.00 5.78 9.58 7.45 ENST00000655317 lncRNA K562 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 1629.00 1.83 3.03 100.0 ENST00000655317 lncRNA K562 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 623.00 2.77 1.16 75.79 LINC01962-202 lncRNA K562 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 3281.00 14.56 6.10 100.0 LINC01962-202 lncRNA K562 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 4304.00 19.10 8.00 100.0 LINC01962-202 lncRNA K562 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 3.00 12.00 0.01 100.0 SNHG14-241 lncRNA K562 (Cell line)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 288.00 90.85 0.54 100.0 MEG8-228 lncRNA K562 (Cell line)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 2.00 8.00 0.00 100.0 SNHG14-254 lncRNA K562 (Cell line)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 1.00 6.25 0.00 100.0 SNHG14-261 lncRNA K562 (Cell line)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 4.00 25.00 0.01 66.67 SNHG14-261 lncRNA K562 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 23.00 0.04 0.04 100.0 LIMD1-AS1-204 lncRNA K562 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 2439.00 4.74 4.53 100.0 LIMD1-AS1-204 lncRNA K562 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 15483.00 30.07 28.78 90.42 LIMD1-AS1-204 lncRNA K562 (Cell line)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 20.00 24.39 0.04 100.0 MIR99AHG-262 lncRNA K562 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 51.00 62.20 0.09 100.0 MIR99AHG-262 lncRNA K562 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 6.00 26.09 0.01 100.0 SNHG14-270 lncRNA K562 (Cell line)