ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 1616.00 1.57 3.00 46.84 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 4974.00 4.84 9.25 62.31 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 15645.00 15.22 29.08 58.93 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 1834.00 1.78 3.41 53.16 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 19835.00 19.30 36.87 82.99 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 29091.00 28.30 54.08 100.0 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 2724.00 2.65 5.06 100.0 CTC1-214 protein coding K562 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 6412.00 6.24 11.92 100.0 CTC1-214 protein coding K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 475.00 1.08 0.88 79.97 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 10857.00 24.67 20.18 99.34 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 311.00 0.71 0.58 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 877.00 1.99 1.63 44.84 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 398.00 0.90 0.74 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 400.00 0.91 0.74 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 971.00 2.21 1.81 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 163.00 0.37 0.30 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 1255.00 2.85 2.33 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 10008.00 22.74 18.60 86.81 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 713.00 1.62 1.33 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 3954.00 8.98 7.35 74.99 ENST00000651540 lncRNA K562 (Cell line)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1.00 0.00 0.00 100.0 ENST00000651540 lncRNA K562 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 27.00 0.19 0.05 100.0 MIRLET7A1HG-203 lncRNA K562 (Cell line)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 130.00 66.33 0.24 100.0 MEG8-225 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 676077.00 92.42 1256.79 100.0 SNHG29-232 lncRNA K562 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 98.00 0.01 0.18 100.0 SNHG29-232 lncRNA K562 (Cell line)