ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000661688.1 ENST00000661688.1_965_986_+ 965–986 12.00 1.40 0.02 100.0 MIR9-2HG-225 lncRNA K562 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 765.00 89.06 1.42 96.35 MIR9-2HG-225 lncRNA K562 (Cell line)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 2.00 5.26 0.00 100.0 MEG8-233 lncRNA K562 (Cell line)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 1.00 2.63 0.00 100.0 MEG8-233 lncRNA K562 (Cell line)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 2.00 2.86 0.00 100.0 SNHG14-278 lncRNA K562 (Cell line)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 56.00 80.00 0.10 100.0 SNHG14-278 lncRNA K562 (Cell line)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 8.00 2.85 0.01 100.0 MEG8-234 lncRNA K562 (Cell line)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 183.00 65.12 0.34 100.0 MEG8-234 lncRNA K562 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 7509.00 88.57 13.96 100.0 SNHG17-252 lncRNA K562 (Cell line)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 3.00 17.65 0.01 75.0 SNHG14-288 lncRNA K562 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 10.00 58.82 0.02 90.91 SNHG14-288 lncRNA K562 (Cell line)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 27.00 67.50 0.05 100.0 MEG8-240 lncRNA K562 (Cell line)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 2.00 15.38 0.00 100.0 SNHG14-303 lncRNA K562 (Cell line)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 1.00 11.11 0.00 100.0 SNHG14-306 lncRNA K562 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 1200.00 3.11 2.23 100.0 ENST00000666735 lncRNA K562 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 11617.00 30.12 21.60 100.0 ENST00000666735 lncRNA K562 (Cell line)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 46.00 30.07 0.09 100.0 MEG8-242 lncRNA K562 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 3.92 17.82 0.01 49.0 SNHG14-312 lncRNA K562 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 4.65 21.12 0.01 58.07 SNHG14-312 lncRNA K562 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 4.00 0.82 0.01 100.0 MEG8-244 lncRNA K562 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 417.00 85.45 0.78 94.13 MEG8-244 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 4040.00 0.13 7.51 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1.00 0.00 0.00 100.0 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 15594.00 0.51 28.99 95.38 SNHG1-248 lncRNA K562 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 312.77 0.01 0.58 51.53 SNHG1-248 lncRNA K562 (Cell line)