ENCFF001REL

Library Details

Organism: Homo Sapiens
Biosample: K562 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AES
Description: Part of ENCODE experiment ENCSR000AES. The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 335.00 0.03 0.62 26.69 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 61502.00 5.80 114.33 99.62 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 22184.00 2.09 41.24 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 112.00 0.01 0.21 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 882.00 0.08 1.64 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 332153.00 31.34 617.46 98.04 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 2326.00 0.22 4.32 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 39950.00 3.77 74.27 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 32863.00 3.10 61.09 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1203.00 0.11 2.24 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 100877.00 9.52 187.53 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 1107.00 0.10 2.06 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 243.00 0.02 0.45 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1162.00 0.11 2.16 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 2366.00 0.22 4.40 66.99 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 15388.00 1.45 28.61 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 40667.00 3.84 75.60 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 3810.00 0.36 7.08 99.76 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 143425.00 13.53 266.62 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 753.00 0.07 1.40 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 72764.00 6.87 135.26 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 65133.00 6.15 121.08 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 12794.00 1.21 23.78 100.0 GAS5-230 retained intron K562 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 273.00 6.10 0.51 100.0 FTX-219 lncRNA K562 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 1956.00 43.69 3.64 78.9 FTX-219 lncRNA K562 (Cell line)