ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 396.00 0.05 0.44 100.0 SNHG29-232 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 121.00 0.02 0.14 100.0 SNHG29-232 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 8.00 0.00 0.01 100.0 SNHG29-232 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 62085.00 7.76 69.33 100.0 SNHG29-232 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 44307.00 5.54 49.48 100.0 SNHG29-232 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 3.00 0.00 0.00 100.0 SNHG29-232 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 1135.00 0.48 1.27 100.0 SNHG14-234 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 80493.00 34.05 89.89 97.39 SNHG14-234 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 78.00 0.03 0.09 100.0 SNHG14-234 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 24010.00 10.16 26.81 100.0 SNHG14-234 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 36568.00 15.47 40.84 100.0 SNHG14-234 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 58399.00 24.71 65.21 97.79 SNHG14-234 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 3475.00 4.98 3.88 35.97 ENST00000655317 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 12336.00 17.67 13.78 100.0 ENST00000655317 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 8917.00 12.77 9.96 66.32 ENST00000655317 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 8973.00 12.85 10.02 100.0 ENST00000655317 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 632.00 2.64 0.71 35.55 LINC01962-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 20535.00 85.90 22.93 100.0 LINC01962-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 220.00 0.92 0.25 100.0 LINC01962-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 25015.00 27.01 27.93 96.01 SNHG14-241 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 3185.00 96.99 3.56 100.0 MEG8-228 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 12464.00 42.39 13.92 100.0 SNHG14-254 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 10727.00 11.28 11.98 100.0 SNHG14-261 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 60372.00 63.51 67.42 91.26 SNHG14-261 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 20.00 0.18 0.02 100.0 LIMD1-AS1-204 lncRNA hepatocyte (In vitro differentiated cells)