ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 269.00 6.98 0.30 100.0 FTX-219 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 2522.00 65.44 2.82 88.4 FTX-219 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 235.00 0.73 0.26 32.24 CTC1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 8602.00 26.77 9.61 96.53 CTC1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 864.00 2.69 0.96 47.5 CTC1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 494.00 1.54 0.55 67.76 CTC1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 4863.00 15.14 5.43 95.99 CTC1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 13001.00 40.47 14.52 100.0 CTC1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 228.00 0.71 0.25 100.0 CTC1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 799.00 2.49 0.89 100.0 CTC1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 8936.00 4.64 9.98 79.87 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 7454.00 3.87 8.32 97.44 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 375.00 0.19 0.42 100.0 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 10166.00 5.28 11.35 64.31 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 85.00 0.04 0.09 100.0 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 174.00 0.09 0.19 100.0 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 529.00 0.27 0.59 100.0 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 349.00 0.18 0.39 100.0 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 749.00 0.39 0.84 100.0 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 40840.00 21.21 45.61 56.39 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 1579.00 0.82 1.76 100.0 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 94614.00 49.13 105.66 79.38 ENST00000651540 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 1089.00 1.82 1.22 100.0 MIRLET7A1HG-203 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 955.00 91.74 1.07 100.0 MEG8-225 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 684335.00 85.50 764.20 100.0 SNHG29-232 lncRNA hepatocyte (In vitro differentiated cells)