ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 4093.00 86.17 4.57 100.0 HCN2-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 135.00 66.83 0.15 100.0 SLC49A4-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 69.00 17.04 0.08 100.0 ATP5MC3-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 1795.00 91.21 2.00 100.0 CDC25A-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 15.00 16.85 0.02 100.0 RUNX3-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 50.00 28.90 0.06 100.0 BLOC1S4-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 199.00 32.78 0.22 100.0 ATAD5-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 125.00 18.57 0.14 100.0 SLITRK5-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 226.00 60.75 0.25 100.0 HASPIN-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 366.00 92.89 0.41 100.0 ATG101-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 54.00 29.03 0.06 100.0 PRICKLE1-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 88.00 92.63 0.10 100.0 MIR133A2-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 312.00 54.36 0.35 100.0 PBLD-204 protein coding hepatocyte (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 32616.00 95.57 36.42 99.57 MIRLET7BHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 442.00 1.30 0.49 96.09 MIRLET7BHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 659.00 1.99 0.74 65.77 MIR375-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 31970.00 96.61 35.70 98.73 MIR375-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1927.00 25.06 2.15 100.0 MIR30E-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 5386.00 70.03 6.01 100.0 MIR30E-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 69.00 50.00 0.08 100.0 MIR29A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 687.00 85.77 0.77 100.0 MIR345-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 9347.00 98.60 10.44 100.0 MIR16-2-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 20.00 2.41 0.02 100.0 MIR340-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 773.00 93.24 0.86 100.0 MIR340-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 1647.00 82.72 1.84 100.0 MIR107-201 miRNA hepatocyte (In vitro differentiated cells)