ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 409.00 4.88 5.39 44.36 ENST00000655317 lncRNA HT-29 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 909.00 10.84 11.99 100.0 ENST00000655317 lncRNA HT-29 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 29.00 3.79 0.38 42.03 LINC01962-202 lncRNA HT-29 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 445.00 58.09 5.87 100.0 LINC01962-202 lncRNA HT-29 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 42.00 5.48 0.55 100.0 LINC01962-202 lncRNA HT-29 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 79.00 18.76 1.04 84.04 LIMD1-AS1-204 lncRNA HT-29 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 1.00 100.00 0.01 100.0 MIR99AHG-262 lncRNA HT-29 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 726.00 80.31 9.57 100.0 SNHG17-252 lncRNA HT-29 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 272.00 13.10 3.59 100.0 ENST00000666735 lncRNA HT-29 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 129.00 6.21 1.70 100.0 ENST00000666735 lncRNA HT-29 (Cell line)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 1.00 50.00 0.01 100.0 MEG8-242 lncRNA HT-29 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 2.00 100.00 0.03 100.0 MEG8-244 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 79929.00 15.20 1054.16 97.38 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 21.00 0.00 0.28 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 600.00 0.11 7.91 99.17 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 133.68 0.03 1.76 61.04 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 353.00 0.07 4.66 87.81 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 262257.00 49.86 3458.82 95.57 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 23.00 0.00 0.30 63.89 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 9590.00 1.82 126.48 99.91 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 192.00 0.04 2.53 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 28851.00 5.49 380.51 97.11 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 73.00 0.01 0.96 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 15.00 0.00 0.20 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 86.00 0.02 1.13 100.0 SNHG1-248 lncRNA HT-29 (Cell line)