ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1.00 14.29 0.01 100.0 HCN2-201 protein coding HT-29 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 75.00 40.98 0.99 100.0 ATP5MC3-201 protein coding HT-29 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 20.00 71.43 0.26 100.0 CDC25A-201 protein coding HT-29 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 6.00 85.71 0.08 100.0 BLOC1S4-201 protein coding HT-29 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 2.00 8.00 0.03 100.0 ATAD5-201 protein coding HT-29 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 6.00 11.11 0.08 100.0 SLITRK5-201 protein coding HT-29 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 3.00 50.00 0.04 100.0 HASPIN-201 protein coding HT-29 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 3.00 21.43 0.04 100.0 PRR14L-201 protein coding HT-29 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 380.00 98.19 5.01 100.0 ATG101-201 protein coding HT-29 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 23.00 74.19 0.30 100.0 PRICKLE1-201 protein coding HT-29 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 32.00 35.56 0.42 100.0 PBLD-204 protein coding HT-29 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 550.00 10.04 7.25 94.34 MIRLET7BHG-201 lncRNA HT-29 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 4714.00 86.08 62.17 99.81 MIRLET7BHG-201 lncRNA HT-29 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 10.00 1.33 0.13 58.82 MIR375-201 miRNA HT-29 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 736.00 97.74 9.71 99.33 MIR375-201 miRNA HT-29 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 302.00 81.18 3.98 100.0 MIR30E-201 miRNA HT-29 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 63.00 16.94 0.83 100.0 MIR30E-201 miRNA HT-29 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 39.00 53.42 0.51 100.0 MIR29A-201 miRNA HT-29 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 11.00 91.67 0.15 100.0 MIR345-201 miRNA HT-29 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 1364.00 98.98 17.99 100.0 MIR16-2-201 miRNA HT-29 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 1.00 3.03 0.01 100.0 MIR340-201 miRNA HT-29 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 29.00 87.88 0.38 100.0 MIR340-201 miRNA HT-29 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 107.00 76.43 1.41 100.0 MIR107-201 miRNA HT-29 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 834.00 89.20 11.00 96.86 MIR103A2-201 miRNA HT-29 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_38_+ 14–38 27.00 33.33 0.36 100.0 MIR425-201 miRNA HT-29 (Cell line)