ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 1647.00 0.31 21.72 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 182.00 0.03 2.40 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 1.00 0.00 0.01 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 53.00 0.01 0.70 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 188.00 0.04 2.48 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 57.00 0.01 0.75 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 13.00 0.00 0.17 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 49402.00 9.39 651.55 94.31 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 59.00 0.01 0.78 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 28.00 0.01 0.37 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 4.00 0.00 0.05 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 25499.00 4.85 336.30 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 149.00 0.03 1.97 72.33 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 85.84 0.02 1.13 39.2 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 7.00 0.00 0.09 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 131.00 0.02 1.73 45.02 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 18.00 0.00 0.24 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 282.00 0.05 3.72 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 1948.00 0.37 25.69 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 3110.00 2.86 41.02 88.73 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 113.00 0.10 1.49 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 23683.45 21.81 312.35 27.27 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 32.00 0.03 0.42 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 32.00 0.03 0.42 100.0 SNHG5-273 lncRNA HT-29 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 78760.56 72.52 1038.75 77.07 SNHG5-273 lncRNA HT-29 (Cell line)