ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 18.00 3.65 0.24 36.73 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 35.00 7.10 0.46 100.0 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 51.00 10.34 0.67 100.0 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 28.00 5.68 0.37 100.0 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 72.00 14.60 0.95 86.75 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 140.00 3.71 1.85 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 819.00 21.72 10.80 76.4 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 420.00 11.14 5.54 77.78 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 24.00 0.64 0.32 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 89.00 2.36 1.17 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 154.00 4.08 2.03 51.68 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 3.00 0.08 0.04 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 395.00 10.47 5.21 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 58.00 1.54 0.76 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 11.00 0.29 0.15 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 38.00 1.01 0.50 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 345.00 9.15 4.55 56.46 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 1169.00 10.72 15.42 100.0 MIRLET7A1HG-203 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 50240.00 80.74 662.60 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 25.00 0.04 0.33 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 12.00 0.02 0.16 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 4156.00 6.68 54.81 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 6408.00 10.30 84.51 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 328.00 3.91 4.33 52.82 ENST00000655317 lncRNA HT-29 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 1493.00 17.80 19.69 100.0 ENST00000655317 lncRNA HT-29 (Cell line)