ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 25.00 0.10 0.17 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 158.00 0.62 1.05 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 4.00 0.02 0.03 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 815.00 3.21 5.43 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1490.00 5.86 9.93 100.0 SNHG29-232 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 95.00 0.81 0.63 100.0 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 5140.00 43.81 34.25 96.33 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 32.00 0.27 0.21 100.0 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 466.00 3.97 3.11 100.0 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1095.00 9.33 7.30 100.0 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 1432.00 12.21 9.54 92.63 SNHG14-234 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 256.00 2.81 1.71 7.42 ENST00000655317 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 269.00 2.95 1.79 100.0 ENST00000655317 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 5504.00 60.44 36.68 88.09 ENST00000655317 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 93.00 1.02 0.62 100.0 ENST00000655317 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 161.00 2.79 1.07 87.03 LINC01962-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 3091.00 53.50 20.60 100.0 LINC01962-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 565.00 9.78 3.77 100.0 LINC01962-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 2747.00 52.70 18.31 90.07 SNHG14-241 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 2507.00 94.60 16.71 100.0 MEG8-228 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 1617.00 56.72 10.78 100.0 SNHG14-254 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 363.00 11.91 2.42 100.0 SNHG14-261 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 1424.00 46.73 9.49 86.78 SNHG14-261 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 52.00 0.56 0.35 100.0 LIMD1-AS1-204 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 39.00 0.42 0.26 100.0 LIMD1-AS1-204 lncRNA esophagus muscularis mucosa (Tissue)