ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 18.00 0.00 0.13 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 830.00 0.17 5.99 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 2619.00 0.54 18.89 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 10014.00 2.07 72.21 82.98 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 7649.00 1.58 55.16 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 67.00 0.01 0.48 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 294.00 0.06 2.12 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 4775.00 0.99 34.43 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 125466.00 25.98 904.72 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 89.00 14.83 0.64 100.0 FTX-219 lncRNA upper lobe of left lung (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 370.00 61.67 2.67 92.27 FTX-219 lncRNA upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 2239.00 14.21 16.15 92.75 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 288.00 1.83 2.08 84.46 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 6811.00 43.23 49.11 86.11 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 175.00 1.11 1.26 7.25 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 2595.00 16.47 18.71 63.92 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 133.00 0.84 0.96 100.0 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 447.00 2.84 3.22 100.0 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 168.00 1.07 1.21 100.0 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 877.00 2.29 6.32 60.11 ENST00000651540 lncRNA upper lobe of left lung (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 943.00 2.47 6.80 93.18 ENST00000651540 lncRNA upper lobe of left lung (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 59.00 0.15 0.43 100.0 ENST00000651540 lncRNA upper lobe of left lung (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 2414.00 6.31 17.41 55.09 ENST00000651540 lncRNA upper lobe of left lung (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 32.00 0.08 0.23 100.0 ENST00000651540 lncRNA upper lobe of left lung (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 89.00 0.23 0.64 100.0 ENST00000651540 lncRNA upper lobe of left lung (Tissue)