ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 476.00 92.97 1.46 100.0 RGS11-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 34434.00 7.12 105.54 88.51 NOP56-217 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 373182.00 77.21 1143.77 86.05 NOP56-217 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 275.00 0.18 0.84 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1273.00 0.82 3.90 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 228.00 0.15 0.70 54.42 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 191.00 0.12 0.59 45.58 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 109174.00 70.19 334.61 95.06 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 27364.00 17.59 83.87 84.55 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 827.00 0.53 2.53 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 4185.00 83.48 12.83 100.0 GNL3-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 491.00 9.79 1.50 100.0 GNL3-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 3209.00 79.20 9.84 100.0 RPL5-205 retained intron gastroesophageal sphincter (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 159.00 3.92 0.49 100.0 RPL5-205 retained intron gastroesophageal sphincter (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 95.00 1.95 0.29 100.0 ZBED9-AS1-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3054.00 92.10 9.36 100.0 RPS3A-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 19608.00 98.85 60.10 100.0 COX7C-203 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 2883.10 17.27 8.84 37.43 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 7260.07 43.50 22.25 71.44 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 3292.00 19.72 10.09 99.97 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1625.00 9.74 4.98 100.0 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 46900.00 68.46 143.74 92.6 RACK1-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 20307.00 29.64 62.24 65.3 RACK1-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 452.00 3.29 1.39 100.0 RNA5SP486-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1105.00 87.01 3.39 100.0 SCARNA5-201 scaRNA gastroesophageal sphincter (Tissue)