ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1009.00 0.46 3.09 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 5.00 0.00 0.02 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 27421.00 97.84 84.04 100.0 RPS8-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 216.00 20.30 0.66 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 423.00 39.76 1.30 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 77.00 7.24 0.24 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 87529.00 14.32 268.27 97.08 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 919.00 0.15 2.82 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 515835.00 84.40 1581.00 97.38 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 5.00 0.00 0.02 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 3810.00 0.62 11.68 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 34.00 42.50 0.10 100.0 GABRE-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 68.00 0.13 0.21 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 22147.00 42.56 67.88 85.45 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 291.00 0.56 0.89 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 244.00 0.47 0.75 87.46 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 19565.00 37.60 59.97 99.79 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 7.00 0.01 0.02 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1755.00 3.37 5.38 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 69.00 0.13 0.21 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 4599.00 67.59 14.10 85.17 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 137.00 2.01 0.42 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 239.00 3.51 0.73 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 748.00 7.79 2.29 100.0 RN7SL2-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 161.00 1.68 0.49 5.92 RN7SL2-201 misc RNA gastroesophageal sphincter (Tissue)