ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 35.00 0.81 0.42 100.0 GNL3-211 retained intron HT-29 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 4122.00 95.95 49.45 100.0 GNL3-211 retained intron HT-29 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 837.00 79.19 10.04 100.0 RPL5-205 retained intron HT-29 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 33.00 3.12 0.40 100.0 RPL5-205 retained intron HT-29 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 210.00 36.21 2.52 100.0 ZBED9-AS1-201 lncRNA HT-29 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1154.00 85.36 13.84 100.0 RPS3A-206 retained intron HT-29 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 2718.00 98.26 32.61 100.0 COX7C-203 protein coding HT-29 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 9599.01 68.57 115.15 71.69 RACK1-229 protein coding HT-29 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 3743.03 26.74 44.90 27.39 RACK1-229 protein coding HT-29 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 10.00 0.07 0.12 62.5 RACK1-229 protein coding HT-29 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2.00 0.01 0.02 100.0 RACK1-229 protein coding HT-29 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 32528.00 76.53 390.22 84.1 RACK1-230 retained intron HT-29 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 9204.00 21.65 110.42 63.67 RACK1-230 retained intron HT-29 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 56.00 12.99 0.67 100.0 RNA5SP486-201 rRNA pseudogene HT-29 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 40.00 74.07 0.48 100.0 SCARNA5-201 scaRNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 6.00 0.05 0.07 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 1300.00 11.16 15.60 94.55 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 206.00 1.77 2.47 93.64 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 1.00 0.01 0.01 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 87.00 0.75 1.04 37.99 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 136.00 1.17 1.63 93.15 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 21.00 0.18 0.25 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 517.00 4.44 6.20 87.33 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 10.00 0.09 0.12 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 18.00 0.15 0.22 58.06 RNY4-201 misc RNA HT-29 (Cell line)