ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 144.00 51.25 1.73 100.0 ATP5MC3-201 protein coding HT-29 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 51.00 94.44 0.61 100.0 CDC25A-201 protein coding HT-29 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 2.00 66.67 0.02 100.0 BLOC1S4-201 protein coding HT-29 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 3.00 11.11 0.04 100.0 ATAD5-201 protein coding HT-29 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 10.00 22.73 0.12 100.0 SLITRK5-201 protein coding HT-29 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 1.00 3.03 0.01 100.0 PRR14L-201 protein coding HT-29 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 457.00 97.65 5.48 100.0 ATG101-201 protein coding HT-29 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 5.00 50.00 0.06 100.0 PRICKLE1-201 protein coding HT-29 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 58.00 43.94 0.70 100.0 PBLD-204 protein coding HT-29 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 691.00 11.03 8.29 95.57 MIRLET7BHG-201 lncRNA HT-29 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 5339.00 85.26 64.05 99.61 MIRLET7BHG-201 lncRNA HT-29 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 988.00 97.24 11.85 99.7 MIR375-201 miRNA HT-29 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 20.00 1.97 0.24 80.0 MIR375-201 miRNA HT-29 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 304.00 76.57 3.65 100.0 MIR30E-201 miRNA HT-29 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 78.00 19.65 0.94 100.0 MIR30E-201 miRNA HT-29 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 46.00 56.79 0.55 100.0 MIR29A-201 miRNA HT-29 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 7.00 77.78 0.08 100.0 MIR345-201 miRNA HT-29 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 1585.00 99.12 19.01 100.0 MIR16-2-201 miRNA HT-29 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 32.00 88.89 0.38 100.0 MIR340-201 miRNA HT-29 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 3.00 8.33 0.04 100.0 MIR340-201 miRNA HT-29 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 145.00 80.11 1.74 100.0 MIR107-201 miRNA HT-29 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 1213.00 89.99 14.55 95.59 MIR103A2-201 miRNA HT-29 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_35_+ 14–35 39.00 35.14 0.47 100.0 MIR425-201 miRNA HT-29 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_38_+ 14–38 38.00 34.23 0.46 100.0 MIR425-201 miRNA HT-29 (Cell line)
ENST00000362168.1 ENST00000362168.1_66_87_+ 66–87 9.00 60.00 0.11 100.0 MIR210-201 miRNA HT-29 (Cell line)