ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 7944.00 68.18 95.30 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 136.00 1.17 1.63 93.15 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 1.00 100.00 0.01 100.0 MIR3142HG-201 lncRNA HT-29 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 2340.00 73.86 28.07 100.0 SNHG6-204 retained intron HT-29 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 6616.00 76.56 79.37 89.35 MIR151A-201 miRNA HT-29 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 1128.00 13.05 13.53 100.0 MIR151A-201 miRNA HT-29 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 147.00 93.63 1.76 100.0 DENND3-221 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 262.00 0.07 3.14 59.55 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 1.00 0.00 0.01 33.33 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 2.00 0.00 0.02 66.67 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 141.00 0.04 1.69 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 4.00 0.00 0.05 66.67 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 3.00 0.00 0.04 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 40.00 0.01 0.48 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 4.00 0.00 0.05 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 13837.00 87.31 165.99 100.0 HSPA8-211 retained intron HT-29 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 9.00 4.15 0.11 100.0 SCARNA9-201 lncRNA HT-29 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 123357.00 92.96 1479.84 100.0 TAF1D-215 retained intron HT-29 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 5181.00 3.90 62.15 100.0 TAF1D-215 retained intron HT-29 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 2627.00 84.06 31.51 100.0 HSPA8-215 retained intron HT-29 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 37.00 1.18 0.44 100.0 HSPA8-215 retained intron HT-29 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 42.00 1.34 0.50 100.0 HSPA8-215 retained intron HT-29 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 64.00 23.19 0.77 100.0 RPS2-215 retained intron HT-29 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 92633.00 90.57 1111.26 91.61 ENST00000548801 lncRNA HT-29 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 11.00 1.20 0.13 100.0 ENST00000554988 lncRNA HT-29 (Cell line)