ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 96026.00 25.55 1151.97 99.24 RPL21-209 retained intron HT-29 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 274703.00 73.10 3295.45 96.95 RPL21-209 retained intron HT-29 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 99.00 40.24 1.19 100.0 GABRE-209 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 37.00 0.05 0.44 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 877.00 1.11 10.52 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 2.00 0.00 0.02 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 22205.00 28.05 266.38 94.07 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 362.00 0.46 4.34 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 105.00 0.13 1.26 15.58 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 52058.00 65.76 624.51 99.51 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 1.00 0.00 0.01 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 30.00 0.34 0.36 100.0 RPL7A-207 protein coding CDS not defined HT-29 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 6.00 0.07 0.07 100.0 RPL7A-207 protein coding CDS not defined HT-29 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 6298.00 70.50 75.55 75.78 RPL7A-207 protein coding CDS not defined HT-29 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 187.00 5.90 2.24 46.17 RN7SL2-201 misc RNA HT-29 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 301.00 9.49 3.61 100.0 RN7SL2-201 misc RNA HT-29 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 41.00 0.18 0.49 100.0 NOP56-217 protein coding CDS not defined HT-29 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 22138.00 95.94 265.58 98.95 NOP56-217 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 3.00 0.00 0.04 21.43 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 228.00 0.33 2.74 100.0 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 401.00 0.58 4.81 100.0 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 11.00 0.02 0.13 78.57 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 62505.00 89.65 749.84 98.03 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 2849.00 4.09 34.18 83.55 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 17.00 0.02 0.20 100.0 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)